COVID-19: Recombination and selection analysis


StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: transeq
Output dataset 'output' from step 1
Frame 1
Standard
Empty.
No
No
No
FASTA (m)
Step 3: MAFFT
Output dataset 'out_file1' from step 2
Amino acids
fftns
0.123
1.53
do not adjust direction
BLOSUM
62
False
False
FASTA
Step 4: tranalign
Output dataset 'output' from step 1
Output dataset 'outputAlignment' from step 3
Standard
FASTA (m)
Step 5: FASTTREE
fasta
Output dataset 'out_file1' from step 4
False
No starting trees
False
Nucleotide
GTR+CAT
No
Step 6: HyPhy-GARD
Output dataset 'out_file1' from step 4
Nucleotide
None
Step 7: HyPhy-aBSREL
Output dataset 'out_file1' from step 4
Output dataset 'output' from step 5
False
Universal code
All branches