Galaxy | Europe | Published Workflow | Krona Plot for Single-Ended Samples

Krona Plot for Single-Ended Samples

Annotation:

Step	Annotation
Step 1: Input dataset collection Sequence Samples select at runtime	Single ended sequence samples from a technology that produces singled ended reads like Oxford Nanopore or Ion Torrent.
Step 2: Kraken2 Single or paired reads Single Input sequences Output dataset 'output' from step 1 Print scientific names instead of just taxids False Confidence 0.0 Minimum Base Quality 0 Minimum hit goups 2 Enable quick operation False Split classified and unclassified outputs? False Create Report: Print a report with aggregrate counts/clade to file False Format report output like Kraken 1's kraken-mpa-report False Report counts for ALL taxa, even if counts are zero False Report minimizer data False Select a Kraken2 database pluspf2021-05
Step 3: Convert Kraken Choose dataset to convert Output dataset 'output' from step 2 Select a taxonomy database 2022-03-08 Read name 2 Taxonomy ID field 3
Step 4: Krona pie chart What is the type of your input data Taxonomy Input file Output dataset 'out_file' from step 3 show ranks from root to Species Provide a name for the basal rank Root Combine data from multiple datasets? False

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pvanheus

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