Testing chloroplast assembly novoplasty

Annotation:

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Step 3: Input dataset
select at runtime
Step 4: NOVOplasty
Separate reads
Output dataset 'output' from step 1
Output dataset 'output' from step 2
Output dataset 'output' from step 3
select at runtime
Illumina
None
Chloroplast assembly (chloro)
120000
200000
151
450
Paired
False
39
False
True
False
Assembled reads Contigs Circularized assembly Contig combinations Contigs Tmp Merged contigs Uncircularized assemblies Variance Heteroplasmy Heteroplasmy assemblies Linkage table heteroplasmy Possible NUMTs Possible NUMTs assemblies Linkage table NUMTs Circos mutations Circos links Config file Extended log Log