Genome Motif plotter to bed file

Annotation:

StepAnnotation
Step 1: fix-fasta-headers
select at runtime
Step 2: find-boxes
Output dataset 'fasta_output' from step 1
CACGTG
CANNTG
True
True
Step 3: Replace Text
Output dataset 'bed_output' from step 2
Replacements
Replacement 1
1_dna:chromosome_chromosome:GRCh38:1:1:248956422:1_REF
1
Replacement 2
2_dna:chromosome_chromosome:GRCh38:2:1:242193529:1_REF
2
Replacement 3
3_dna:chromosome_chromosome:GRCh38:3:1:198295559:1_REF
3
Replacement 4
4_dna:chromosome_chromosome:GRCh38:4:1:190214555:1_REF
4
Replacement 5
5_dna:chromosome_chromosome:GRCh38:5:1:181538259:1_REF
5
Replacement 6
6_dna:chromosome_chromosome:GRCh38:6:1:170805979:1_REF
6
Replacement 7
7_dna:chromosome_chromosome:GRCh38:7:1:159345973:1_REF
7
Replacement 8
8_dna:chromosome_chromosome:GRCh38:8:1:145138636:1_REF
8
Replacement 9
9_dna:chromosome_chromosome:GRCh38:9:1:138394717:1_REF
9
Replacement 10
10_dna:chromosome_chromosome:GRCh38:10:1:133797422:1_REF
10
Replacement 11
11_dna:chromosome_chromosome:GRCh38:11:1:135086622:1_REF
11
Replacement 12
12_dna:chromosome_chromosome:GRCh38:12:1:133275309:1_REF
12
Replacement 13
13_dna:chromosome_chromosome:GRCh38:13:1:114364328:1_REF
13
Replacement 14
14_dna:chromosome_chromosome:GRCh38:14:1:107043718:1_REF
14
Replacement 15
15_dna:chromosome_chromosome:GRCh38:15:1:101991189:1_REF
15
Replacement 16
16_dna:chromosome_chromosome:GRCh38:16:1:90338345:1_REF
16
Replacement 17
17_dna:chromosome_chromosome:GRCh38:17:1:83257441:1_REF
17
Replacement 18
18_dna:chromosome_chromosome:GRCh38:18:1:80373285:1_REF
18
Replacement 19
19_dna:chromosome_chromosome:GRCh38:19:1:58617616:1_REF
19
Replacement 20
20_dna:chromosome_chromosome:GRCh38:20:1:64444167:1_REF
20
Replacement 21
21_dna:chromosome_chromosome:GRCh38:21:1:46709983:1_REF
21
Replacement 22
22_dna:chromosome_chromosome:GRCh38:22:1:50818468:1_REF
22
Replacement 23
X_dna:chromosome_chromosome:GRCh38:X:1:156040895:1_REF
X
Replacement 24
Y_dna:chromosome_chromosome:GRCh38:Y:2781480:56887902:1_REF
Y
Step 4: Split file
Output dataset 'outfile' from step 3
4