Galaxy Erasmus MC
The homepage of the Erasmus MC Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
Annual Report 2023 of the Freiburg Galaxy Team
Report about activities and achievements
BioNT Community Event: Open call for proposals
Are you interested in training and want to exchange and get to know other learning communities? BioNT, together with the Carpentries, is hosting a 3-day community event.
Galaxy Team Meeting in Austin, Texas
Check out what was accomplished when part of the Galaxy team got together in Austin, Texas, for a team meeting!
Dive into the March 2024 Galaxy Newsletter!
Events
May 7 - May 11Biology of Genomes
The 2024 meeting will address DNA sequence variation and its role in molecular evolution, population genetics, complex diseases, comparative genomics, large-scale studies of gene and protein expression, and genomic approaches to ecological systems.
Jun 10 - Jun 11ELIXIR All Hands 2024
The 10th ELIXIR All Hands meeting brings together members of the ELIXIR community from across the ELIXIR Nodes, and collaborators from partner organisations. Galaxy will be presented by different nodes.
Jun 17 - Jun 21Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Jun 24 - Jun 292024 Galaxy Community Conference (GCC2024)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
FTP Upload
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
As an example, a screenshot of the configuration settings for FileZilla can be found here.
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Our team
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.