Compset longname is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD Compset specification file is /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/../cime_config/config_compsets.xml Compset forcing is 1850 Com forcing is Biogeochemistry intercomponent with diagnostic CO2 ATM component is CAM cam6 physics: LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop: ICE component is Sea ICE (cice) model version 5 OCN component is POP2 EcosystemAbiotic DIC/DIC14 ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution): WAV component is Wave Watch ESP component is Compset specific settings: name is RUN_STARTDATE and value is 0001-01-01 Compset specific settings: name is RUN_REFDATE and value is 0301-01-01 Compset specific settings: name is RUN_TYPE and value is hybrid Compset specific settings: name is RUN_REFCASE and value is b.e20.B1850.f19_g17.release_cesm2_1_0.020 Compset specific settings: name is CLM_NAMELIST_OPTS and value is use_init_interp=.true. Could not find machine match for 'vgcnbwc-worker-c120m215-1442.novalocal' or 'vgcnbwc-worker-c120m215-1442.novalocal' Machine is galaxy Pes setting: grid is a%1.9x2.5_l%1.9x2.5_oi%gx1v7_r%r05_g%gland4_w%ww3a_m%gx1v7 Pes setting: compset is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD Pes setting: tasks is {'NTASKS_ATM': -1, 'NTASKS_ROF': -1, 'NTASKS_OCN': -1, 'NTASKS_ICE': -1, 'NTASKS_CPL': -1, 'NTASKS_LND': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_ESP': -1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_ESP': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_CPL': 0, 'ROOTPE_LND': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_ESP': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none Compset is: 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD Grid is: a%1.9x2.5_l%1.9x2.5_oi%gx1v7_r%r05_g%gland4_w%ww3a_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'pop', 'mosart', 'cism', 'ww3', 'sesp', 'drv', 'dart'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT No project info available WARNING: No cesm Model version found. Batch_system_type is none Creating Case directory /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17 Adding user mods directory /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/usermods_dirs Setting resource.RLIMIT_STACK to -1 from (-1, -1) /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17/env_mach_specific.xml already exists, delete to replace Creating batch scripts Writing case.run script from input template /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/config/cesm/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/config/cesm/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run Building case in directory /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17 sharedlib_only is False model_only is False Setting resource.RLIMIT_STACK to -1 from (-1, -1) Generating component namelists as part of build - Prestaging REFCASE (/data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01) to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.restart Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ice Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.lnd Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.ovf Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.drv Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.glc Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.atm Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.rof Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.tavg.5 Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.cice.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.pop.ro.0301-01-01-00000 Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.ww3.r.0301-01-01-00000 Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.pop.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.cpl.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.mosart.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.clm2.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.cam.i.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.cam.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.cism.r.0301-01-01-00000.nc Staging file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/b.e20.B1850.f19_g17.release_cesm2_1_0.020.cam.rs.0301-01-01-00000.nc Creating component namelists Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cam//cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17/Buildconf/camconf/atm_in file2 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run/atm_in Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/clm//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cice//cime_config/buildnml ...buildnml calling cice buildcpp to set build time options Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/pop//cime_config/buildnml ... buildnml: calling pop buildcpp to set build time options Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/mosart//cime_config/buildnml Running /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cism//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/ww3//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/components/stub_comps/sesp/cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Building gptl with output to file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/gptl.bldlog.210618-134942 Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building mct with output to file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/mct.bldlog.210618-134942 Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/build_scripts/buildlib.mct Building pio with output to file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/pio.bldlog.210618-134942 Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/build_scripts/buildlib.pio Building csm_share with output to file /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/csm_share.bldlog.210618-134942 Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/build_scripts/buildlib.csm_share Component csm_share build complete with 3 warnings - Building clm4_5/clm5_0 Library Building lnd with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/lnd.bldlog.210618-134942 Component lnd build complete with 9 warnings clm built in 43.851452 seconds Building atm with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/atm.bldlog.210618-134942 Building ice with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/ice.bldlog.210618-134942 Building ocn with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/ocn.bldlog.210618-134942 Building rof with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/rof.bldlog.210618-134942 Building glc with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/glc.bldlog.210618-134942 Building wav with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/wav.bldlog.210618-134942 Building esp with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/esp.bldlog.210618-134942 sesp built in 3.863756 seconds Component rof build complete with 1 warnings mosart built in 14.302877 seconds Component wav build complete with 2 warnings ww built in 15.444882 seconds cice built in 39.175724 seconds Component glc build complete with 15 warnings cism built in 75.711027 seconds Component ocn build complete with 8 warnings pop built in 79.670350 seconds Component atm build complete with 8 warnings cam built in 127.908208 seconds Building cesm with output to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/cesm.bldlog.210618-134942 Component cesm exe build complete with 3 warnings Time spent not building: 9.059499 sec Time spent building: 268.969461 sec MODEL BUILD HAS FINISHED SUCCESSFULLY Setting resource.RLIMIT_STACK to -1 from (-1, -1) - Prestaging REFCASE (/data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01) to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.restart Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ice Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.lnd Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.ovf Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.drv Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.glc Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.atm Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.rof Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.tavg.5 Creating component namelists Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cam//cime_config/buildnml CAM namelist copy: file1 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17/Buildconf/camconf/atm_in file2 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run/atm_in Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/clm//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cice//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/pop//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/mosart//cime_config/buildnml Running /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cism//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/ww3//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/components/stub_comps/sesp/cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists Checking that inputdata is available as part of case submission Setting resource.RLIMIT_STACK to -1 from (-1, -1) Loading input file list: 'Buildconf/clm.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/pop.input_data_list' Loading input file list: 'Buildconf/cism.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/ww3.input_data_list' - Prestaging REFCASE (/data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01) to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.restart Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ice Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.lnd Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.ovf Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.drv Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.glc Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.atm Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.rof Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.tavg.5 - Prestaging REFCASE (/data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01) to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.restart Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ice Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.lnd Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.ovf Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.drv Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.glc Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.atm Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.rof Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.tavg.5 Creating component namelists Finished creating component namelists Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Setting resource.RLIMIT_STACK to -1 from (-1, -1) Generating namelists for /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17 - Prestaging REFCASE (/data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01) to /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.restart Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ice Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.lnd Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.ovf Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.drv Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.glc Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.atm Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.rof Copy rpointer /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata/cesm2_init/b.e20.B1850.f19_g17.release_cesm2_1_0.020/0301-01-01/rpointer.ocn.tavg.5 Creating component namelists Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cam//cime_config/buildnml CAM namelist copy: file1 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/b1850_f19_g17/Buildconf/camconf/atm_in file2 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run/atm_in Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/clm//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cice//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/pop//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/mosart//cime_config/buildnml Running /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/cism//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/components/ww3//cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/components/stub_comps/sesp/cime_config/buildnml Calling /usr/local/tools/_conda/envs/mulled-v1-06c97b3f91d7b965c3ac15921187068240574cb2619dfa62f6af5a3f2030ffff/cime/src/drivers/mct/cime_config/buildnml Finished creating component namelists ------------------------------------------------------------------------- - Prestage required restarts into /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/run - Case input data directory (DIN_LOC_ROOT) is /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- 2021-06-18 13:54:34 MODEL EXECUTION BEGINS HERE run command is mpiexec -np 16 /data/dnb03/galaxy_db/job_working_directory/023/495/23495499/working/work/b1850_f19_g17/bld/cesm.exe >> cesm.log.$LID 2>&1 2021-06-18 18:21:40 MODEL EXECUTION HAS FINISHED check for resubmit dout_s False mach galaxy resubmit_num 0 ERROR: No result from jobs [('case.run', None)]