edgeR Analysis Output:

Differential Expression Counts:

Plots:

Tables:

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.tsv files can be viewed in Excel or any spreadsheet program.

Additional Information

• Genes without more than 1 CPM in at least 1 samples are insignificant and filtered out.
• 3732 of 18926 (19.72%) genes were filtered out for low expression.
• TMM was the method used to normalise library sizes.
• The edgeR likelihood ratio test was used.
• MD-Plot highlighted genes are significant at FDR of 0.1 and exhibit log2-fold-change of at least 0.

Summary of experimental data:

*CHECK THAT SAMPLES ARE ASSOCIATED WITH CORRECT GROUP(S)*