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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.27

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-06-06, 08:28 CEST based on data in: /data/jwd05e/main/084/514/84514545/working/multiqc_WDir

        General Statistics

        Showing 2/2 rows and 2/6 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimapped
        GSM461177_untreat_paired
        10.4M
        9.2M
        88.6%
        8.7M
        83.1%
        0.6M
        GSM461180_treat_paired
        11.2M
        9.3M
        83.6%
        8.8M
        79.0%
        0.5M

        STAR

        Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

        Summary Statistics

        Summary statistics from the STAR alignment

        Showing 2/2 rows and 10/19 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimappedAvg. read lenAvg. mapped lenSplicesAnnotated splicesGT/AG splicesGC/AG splicesAT/AC splicesNon-canonical splicesMismatch rateDel rateDel lenIns rateIns len
        GSM461177_untreat_paired
        10.4M
        9.2M
        88.6%
        8.7M
        83.1%
        0.6M
        73.0bp
        72.9bp
        1.0M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        0.8%
        0.0%
        1.5bp
        0.0%
        1.4bp
        GSM461180_treat_paired
        11.2M
        9.3M
        83.6%
        8.8M
        79.0%
        0.5M
        71.0bp
        70.5bp
        0.9M
        0.9M
        0.9M
        0.0M
        0.0M
        0.0M
        1.7%
        0.0%
        1.4bp
        0.0%
        1.3bp

        Alignment Scores

        Created with MultiQC

        MultiQC v1.27 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.